Showing posts with label Silk Road. Show all posts
Showing posts with label Silk Road. Show all posts

June 03, 2013

mtDNA from Nepal and Tibet (Gayden et al. 2013)

Am J Phys Anthropol. 2013 Jun;151(2):169-82. doi: 10.1002/ajpa.22240. Epub 2013 Apr 12.

The Himalayas: Barrier and conduit for gene flow.

Gayden T, Perez A, Persad PJ, Bukhari A, Chennakrishnaiah S, Simms T, Maloney T, Rodriguez K, Herrera RJ.

Abstract

The Himalayan mountain range is strategically located at the crossroads of the major cultural centers in Asia, the Middle East and Europe. Although previous Y-chromosome studies indicate that the Himalayas served as a natural barrier for gene flow from the south to the Tibetan plateau, this region is believed to have played an important role as a corridor for human migrations between East and West Eurasia along the ancient Silk Road. To evaluate the effects of the Himalayan mountain range in shaping the maternal lineages of populations residing on either side of the cordillera, we analyzed mitochondrial DNA variation in 344 samples from three Nepalese collections (Newar, Kathmandu and Tamang) and a general population of Tibet. Our results revealed a predominantly East Asian-specific component in Tibet and Tamang, whereas Newar and Kathmandu are both characterized by a combination of East and South Central Asian lineages. Interestingly, Newar and Kathmandu harbor several deep-rooted Indian lineages, including M2, R5, and U2, whose coalescent times from this study (U2, >40 kya) and previous reports (M2 and R5, >50 kya) suggest that Nepal was inhabited during the initial peopling of South Central Asia. Comparisons with our previous Y-chromosome data indicate sex-biased migrations in Tamang and a founder effect and/or genetic drift in Tamang and Newar. Altogether, our results confirm that while the Himalayas acted as a geographic barrier for human movement from the Indian subcontinent to the Tibetan highland, it also served as a conduit for gene flow between Central and East Asia.

Link

September 08, 2008

mtDNA of Mongolians

While I agree that the Mongol Empire played a major role in the admixture of Caucasoids and Mongoloids, we have very clear evidence now that the two races had been mixing in Central Asia long before that time.

J Hum Genet.

Genetic imprint of the Mongol: signal from phylogeographic analysis of mitochondrial DNA

Cheng B, Tang W, He L, Dong Y, Lu J, Lei Y, Yu H, Zhang J, Xiao C.

Abstract

Mitochondrial deoxyribonucleic acid (DNA) from 201 unrelated Mongolian individuals in the three different regions was analyzed. The Mongolians took the dominant East Asian-specific haplogroups, and some European-prevalent haplogroups were detected. The East Asians-specific haplogroups distributed from east to west in decreasing frequencies, and the European-specific haplogroups distributed conversely. These genetic data suggest that the Mongolian empire played an important role in the maternal genetic admixture across Mongolians and even Central Asian populations, whereas the Silk Road might have contributed little in the admixture between the East Asians and the Europeans.

Link

September 27, 2005

The spread of tuberculosis

Genghis Khan's previous claim to genetic fame was linked to the presence in about 0.5% of the population of the entire world and in a substantial portion of the population of Central Asia, of a unique Y-chromosome haplotype.

Now, a team of geneticists led by Igor Mokrusov are uncovering the darker aspects of the Great Khan's conquests. From their press release.
Mokrousov's team hypothesized that, given the strong gender bias of TB infectivity and the likely family-based mode of TB transmission during pre-industrialized times, M. tuberculosis dissemination has reflected the unidirectional inheritance of the paternally transmitted human Y chromosome. To test this hypothesis, the authors compared the genetic profiles of a common form of M. tuberculosis, called the Beijing genotype, with known patterns of prehistoric and recent human migrations, as well as with global patterns of Y-chromosome variation. Strikingly, they observed that over the past 60,000-100,000 years, the dispersal and evolution of M. tuberculosis appears to have precisely ebbed and flowed according to human migration patterns.

The authors describe how the Beijing genotype of M. tuberculosis originated in a specific human population called the K-M9 in central Asia approximately 30,000-40,000 years ago following a second "out of Africa" migration event. The bacteria and its human host then disseminated northeast into Siberia between 20,000-30,000 years ago and throughout eastern Asia between 4,000-10,000 years ago. More recently, the Beijing genotype of M. tuberculosis was introduced into northern Eurasia, perhaps by Genghis Khan himself during the 1200's, and into South Africa, possibly through sea trade contacts with Indonesia or China during the last 300 years.

Please note that while most news will doubtlessly focus on the Genghis Khan angle, the spread of haplogroup K-M9 occurred in deep prehistory. Only much later did a a particular genotype of M. tuberculosis spread, perhaps by the actions of Genghis Khan, although there have been multiple incursions of Mongoloid peoples which may account for the current distribution, and as the authors note, its introduction into South Africa was an independent event.

UPDATE

I have finished reading the paper, and the argument that the authors make for the introduction of the variant in Europe by the armies of Genghis Khan is quite ingenuous:
Since the Beijing genotype is not a European endemic variant, the published PC analysis of European human populations allows us to rule out those migrations that equally concerned both Russia and Europe as sources of the Beijing strains. These are defined by Finno-Ugric (PC2) (Cavalli-Sforza 2001), Scythe (PC3) (Cavalli-Sforza 2001), and Hun (Christian 1998) expansions. We may further speculate that trade contacts as such, even long-lasting ones, are not sufficient for an effective dissemination of the M. tuberculosis strains if they are not supported by a kind of demic diffusion of the strains’ carriers, manifested as population growth and migration. The Silk Road connected China with Europe for almost two millennia, 2 BC–1600 AD (Christian 1998), and this route may have been opened much earlier, based on the transfer of the first ceramics technology from Japan to the Middle East and Europe at the beginning of agricultural practice (Cavalli-Sforza 2001). However, it is appropriate to reiterate that Beijing strains are not identified as a European endemic variant.

Finally, we suggest the TB spread related to the Genghis (or Chinggiz) Khan invasion to be more plausible. The Mongol empire of the 13th century brought the different parts of Eurasia closer than they had ever been before and created an economic and cultural system embracing much of the Eurasian land mass (Christian 1998). It was also a period of remarkable ethnic mixing since the Mongol army grew by incorporating the armies of many different nations that it had defeated, including Han Chinese (Christian 1998). McNeill (1976) suggested that Mongol invasions also unified Eurasia epidemiologically, allowing the exchange of the disease vectors throughout Eurasia. Genghis Khan did eventually come in the center of Europe, but for a short time. This was sufficient for the dissemination of Yersinia pestis to occur, but not for that of the far less contagious M. tuberculosis. Even if some M. tuberculosis Beijing genotype strains had been brought to Europe in this way, this may not have manifested rapidly. Subsequently, the Black Death that decimated European human populations could have efficiently eliminated rare carriers of the M. tuberculosis Beijing genotype. By contrast, further close interaction between Rus’ and Orda was prolonged for three centuries, and it may be possible that the Mongol invasion and the subsequent yoke/cohabitation were indeed the vehicle that brought M. tuberculosis Beijing genotype strains to Russia
The authors are noting that there have been multiple movements of peoples from Asia to Europe. So, how do they conclude that the Mongols of Genghis Khan are implicated? If the genotype was brought e.g., by the Huns, or the Scythians, or the Finno-Ugrians, then we would expect to find it commonly in Europe, because these movements affected large parts of the continent. But, the Beijing haplotype is not a European variant, so by a process of elimination these movements are probably not responsible for its dissemination.

Rather, it is the Mongols who held Russia -but not Europe- captive for three centuries, and Russia is the country in Europe where the Beijing genotype is found. Moreover, since the Mongols recruited soldiers from China, they could have acquired the genotype, and then brought it to Russia. It is then during the centuries of Mongol domination, at the western edge of Mongol expansion that the Beijing genotype was brought to Russia.

Genome Research

Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: Clues from human phylogeography

Igor Mokrousov et al.

Abstract

We suggest that the evolution of the population structure of microbial pathogens is influenced by that of modern humans. Consequently, the timing of hallmark changes in bacterial genomes within the last 100,000 yr may be attempted by comparison with relevant human migrations. Here, we used a lineage within Mycobacterium tuberculosis, a Beijing genotype, as a model and compared its phylogeography with human demography and Y chromosome-based phylogeography. We hypothesize that two key events shaped the early history of the Beijing genotype: (1) its Upper Palaeolithic origin in the Homo sapiens sapiens K-M9 cluster in Central Asia, and (2) primary Neolithic dispersal of the secondary Beijing NTF::IS6110 lineage by Proto-Sino-Tibetan farmers within east Asia (human O-M214/M122 haplogroup). The independent introductions of the Beijing strains from east Asia to northern Eurasia and South Africa were likely historically recent, whereas their differential dissemination within these areas has been influenced by demographic and climatic factors.

Link

August 24, 2004

mtDNA from Xinjiang

A new study quantifies the level of Caucasoid admixture in various populations of the Xinjiang province of China, which ranges from 0% in the Han Chinese to 43% in the Uygur.

Mol Biol Evol.
2004 Aug 18 [Epub ahead of print]

Different Matrilineal Contributions to Genetic Structure of Ethnic Groups in the Silk Road Region in China.

Yao YG

Previous studies have shown that there were extensive genetic admixtures in the Silk Road region. In the present study, we analyzed 252 mtDNAs of five ethnic groups (Uygur, Uzbek, Kazak, Mongolian, and Hui) from Xinjiang Province, China (where once was the via route of the Silk Road), together with some reported data from the adjacent regions in Central Asia. In a simple way, we classified the mtDNAs into different haplogroups (monophyletic clades in the rooted mtDNA tree) according to the available phylogenetic information and compared their frequencies to show the differences among the matrilineal genetic structures of these populations with different demographic histories. With the exception of 8 unassigned M(*), N(*) and R(*) mtDNAs, all the mtDNA types identified here belonged to defined subhaplogroups of haplogroups M and N (including R) and consisted of subsets of both the eastern and western Eurasian pools, thus providing direct evidence in supporting the suggestion that Central Asia be the place of the genetic admixture of the East and the West. Although our samples were from the same geographic location, a decreasing tendency of the western Eurasian-specific haplogroup frequency was observed, with the highest frequency present in Uygur (42.6%) and Uzbek (41.4%), followed by Kazak (30.2%), Mongolian (14.3%), and Hui (6.7%). No western Eurasian type was found in Han Chinese samples from the same place. The frequencies of the eastern Eurasian-specific haplogroups also varied in these samples. Combined with the historical records, ethno-origin, migratory history, and marriage custom might play different roles in shaping the matrilineal genetic structure of different ethnic populations resided in this region.

Link (pdf)