December 30, 2004

Racial clusters

This study is self-explanatory really, but two interesting findings are the emergence of a "Hispanic" racial cluster, which can be explained by the choice of a population sample from a single location, as Hispanics are generally heterogeneous racially, and the near-perfect differentiation of the Japanese from the Chinese in the Mongoloid cluster, suggesting the potential for subracial differentiation in future studies.

The research also confirms that in terms of genetic similarity, the major split of mankind is between the Mongoloids and the rest, a finding similar to Rosenberg et al. (2002) and to craniometric clustering results.



Am. J. Hum. Genet., 76:000, 2005

Genetic Structure, Self-Identified Race/Ethnicity, and Confounding in Case-Control Association Studies

Hua Tang et al.

We have analyzed genetic data for 326 microsatellite markers that were typed uniformly in a large multiethnic population-based sample of individuals as part of a study of the genetics of hypertension (Family Blood Pressure Program). Subjects identified themselves as belonging to one of four major racial/ethnic groups (white, African American, East Asian, and Hispanic) and were recruited from 15 different geographic locales within the United States and Taiwan. Genetic cluster analysis of the microsatellite markers produced four major clusters, which showed near-perfect correspondence with the four self-reported race/ethnicity categories. Of 3,636 subjects of varying race/ethnicity, only 5 (0.14%) showed genetic cluster membership different from their self-identified race/ethnicity. On the other hand, we detected only modest genetic differentiation between different current geographic locales within each race/ethnicity group. Thus, ancient geographic ancestry, which is highly correlated with self-identified race/ethnicity—as opposed to current residence—is the major determinant of genetic structure in the U.S. population. Implications of this genetic structure for case-control association studies are discussed.

Link

December 29, 2004

Romans in China

Text of an article originally posted in the Economist.

mtDNA haplogroup X is not present in extant South American Indians

Haplogroup X originated in the western part of the Old World, and is not shared by most Mongoloids, with the exception of some Siberians and Native Americans. This study failed to discover its presence in South American Indians.

American Journal of Physical Anthropology (Early View)

Is haplogroup X present in extant South American Indians?

Cláudia L. Dornelles et al.

Abstract

A total of 1,159 mitochondrial DNA samples from two Mongolian, two Siberian, and 25 South Native American populations was surveyed for the presence of the C16278T mutation, frequently found in haplogroup X. Material from 25 carriers of that mutation was then sequenced for the hypervariable segment I (HVS-I) control region, and those that still were not classifiable in classical Amerindian haplogroups were further studied. The tests involved all the control region, as well as the presence of characteristic mutations in seven coding fragments, totalling 5,760 base pairs. The results indicate that haplogroup X is not present in these samples.

Link

Greek and Chinese mental processing

A very important new article by a group of Greek and Chinese researchers provides the first quantitative assessment of mental processing in two groups of students, aged 8 to 14, belonging to the Caucasoid and Mongoloid races.

It has long been known that many Mongoloid groups generally have higher IQ scores than Caucasoids, but the reasons for this difference have not been explained. As the authors point out "Intelligence is a multidimensional and hierarchical edifice" which involves both "general" processes which co-ordinate information processing across many domains of thought, as well as "specialized" processes which affect only particular mental tasks, involving e.g., verbal, spatial, or quantitative reasoning.

Mental processing is affected by both genes and environment, and these differ between Greeks and Chinese, as well as between most Caucasoids and Mongoloids in general. For example, Chinese words are shorter than those of Indo-European languages spoken by most Caucasoids, whereas Chinese students have to learn a logographic, picture-based writing system. These differences may affect mental processing, e.g., because "shorter" Chinese words may be stored more easily, whereas more space is required to short the more "complex" logograms of the Chinese writing system.

The article provides three important conclusions. First, the architecture of mental processing is the same in both Greeks and Chinese, involving essentially the same mental processes and organization. In other words, Greeks and Chinese think "the same". Second, the Greeks and Chinese show no difference in the general factor of mental processing which is used across different thought domains. Rather, the difference between the two groups is limited to areas requiring visuo/spatial processing:

Thus, we suggest that this advantage is related to the massive visuo/ spatial practice that they receive in learning Chinese writing. This claim is based on three findings. First, this advantage only slightly generalizes to other realms, where there is equivalent practice or minimal visuo/spatial processing. Second, the two cultural groups have about the same number of visualizers until the third grade; with increasing education, which differentiates the two cultures in the mastering of complex visual information more than in any other aspect of the curriculum, visualizers become many more among the Chinese. Third, with time, Greeks, gradually acquire compensating strategies, even if relevant practice is not sufficient to transform them into visualizers. As a result, their differences from the Chinese tend to decrease with increasing age in the visuo/spatial domain and to disappear in some other domains, such as quantitative reasoning.


The idea that the Chinese logographic system (as well as other similar systems used by other Mongoloids, such as the Koreans or Japanese) represents a type of "mental doping", improving visuo/spatial performance at an early age -if it is confirmed- represents an important victory for those who believe in the significant effect that culture has in mental development, and a further nail in the coffin of the theory that human groups differ from each other in mental processing due to innate genetic factors.

PS: The finding that Greeks do not differ from Chinese in g further discredits Richard Lynn's assessment of Greek IQ, which -together with much of the data in his book- is based on massaged data.

Intelligence (Article in Press)

The architecture, dynamics, and development of mental processing: Greek, Chinese, or Universal?

Andreas Demetriou et al.

Abstract

This study compared Greeks with Chinese, from 8 to 14 years of age, on measures of processing efficiency, working memory, and reasoning. All processes were addressed through three domains of relations: verbal/propositional, quantitative, and visuo/spatial. Structural equations modelling and rating scale analysis showed that the architecture and developmental patterning of the various processes are basically the same in the two ethic groups. The Chinese clearly outperformed the Greeks in all tasks addressing visuo/spatial processing, from processing efficiency through working memory and reasoning, but neither in g nor in processes where the two groups have equivalent experience. This advantage was associated to the massive practice in visuo/spatial processing that is required to learn the Chinese logographic writing system. The implications for general theory of intelligence and intellectual development are discussed.

Link

mtDNA of Sea Island Gullah-speaking African Americans

American Journal of Physical Anthropology (Early View)

Mitochondrial DNA (mtDNA) haplotypes reveal maternal population genetic affinities of Sea Island Gullah-speaking African Americans

David C. McLean Jr. et al.

Abstract

To better understand the population substructure of African Americans living in coastal South Carolina, we used restriction site polymorphisms and an insertion/deletion in mitochondrial DNA (mtDNA) to construct seven-position haplotypes across 1,395 individuals from Sierra Leone, Africa, from U.S. European Americans, and from the New World African-derived populations of Jamaica, Gullah-speaking African Americans of the South Carolina Sea Islands (Gullahs), African Americans living in Charleston, South Carolina, and West Coast African Americans. Analyses showed a high degree of similarity within the New World African-derived populations, where haplotype frequencies and diversities were similar. -statistics indicated that very little genetic differentiation has occurred within New World African-derived populations, but that there has been significant differentiation of these populations from Sierra Leoneans. Genetic distance estimates indicated a close relationship of Gullahs and Jamaicans with Sierra Leoneans, while African Americans living in Charleston and the West Coast were progressively more distantly related to the Sierra Leoneans. We observed low maternal European American admixture in the Jamaican and Gullah samples (m = 0.020 and 0.064, respectively) that increased sharply in a clinal pattern from Charleston African Americans to West Coast African Americans (m = 0.099 and 0.205, respectively). The appreciably reduced maternal European American admixture noted in the Gullah indicates that the Gullah may be uniquely situated to allow genetic epidemiology studies of complex diseases in African Americans with low European American admixture.

Link

Tall men and broad women

A very interesting new article suggests an explanation for pelvic sexual dimorphism in humans and other primates. It is found that species where men are taller than women also have the condition of women having a wide pelvis compared to men. It is suggested that the default condition is the female one; higher testosterone levels lead to increased vertical growth in males, and this extra growth is redirected from the lateral growth of the pelvis.

American Journal of Physical Anthropology (Early View)

Big-bodied males help us recognize that females have big pelves

Robert G. Tague

ABSTRACT

Schultz ([1949] Am. J. Phys. Anthropol. 7:401-424) presented a conundrum: among primates, sexual dimorphism of the pelvis is a developmental adjunct to dimorphism in other aspects of the body, albeit in the converse direction. Among species in which males are larger than females in body size, females are larger than males in some pelvic dimensions; species with little sexual dimorphism in nonpelvic size show little pelvic dimorphism. Obstetrical difficulty does not explain this relationship. The present study addresses this issue, evaluating the relationship between pelvic and femoral sexual dimorphism in 12 anthropoid species. The hypothesis is that species in which males are significantly larger than females in femoral size will have a higher incidence, magnitude, and variability of pelvic sexual dimorphism, with females having relatively larger pelves than males, compared with species monomorphic in femoral size. The results are consistent with the hypothesis. The proposed explanation is that the default pelvic anatomy in adulthood is that of the female; testosterone redirects growth from the default type to that of the male by differentially enhancing and repressing growth among the pelvic dimensions. Testosterone also influences sexual dimorphism of the femur. The magnitude of the pelvic response to testosterone is greater in species that are sexually dimorphic in the femur than in those that are monomorphic.

Link

Major Climate Change Occurred 5,200 Years Ago: Evidence Suggests That History Could Repeat Itself

COLUMBUS, Ohio -- Glaciologist Lonnie Thompson worries that he may have found clues that show history repeating itself, and if he is right, the result could have important implications to modern society.

Thompson has spent his career trekking to the far corners of the world to find remote ice fields and then bring back cores drilled from their centers. Within those cores are the records of ancient climate from across the globe.

From the mountains of data drawn by analyzing countless ice cores, and a meticulous review of sometimes obscure historic records, Thompson and his research team at Ohio State University are convinced that the global climate has changed dramatically.

But more importantly, they believe it has happened at least once before, and the results were nearly catastrophic to emerging cultures at the time. He outlined his interpretations and fears today at the annual meeting of the American Geophysical Union in San Francisco.

Full Story

December 27, 2004

Y chromosomes of Azores Islands

Ann Hum Genet (Online Early)

The Y-chromosomal Heritage of the Azores Islands Population

P. R. Pacheco et al.

The Azores, a Portuguese archipelago located in the north Atlantic Ocean, had no native population when the Portuguese first arrived in the 15th century. The islands were populated mainly by the Portuguese, but Jews, Moorish prisoners, African slaves, Flemish, French and Spaniards also contributed to the initial settlement. To understand the paternal origins and diversity of the extant Azorean population, we typed genomic DNA samples from 172 individuals using a combination of 10 Y-biallelic markers (YAP, SRY-1532, SRY-2627, 92R7, M9, sY81, Tat, SRY-8299, 12f2 and LLY22g) and the following Y-chromosomal STR systems: DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393 and DYS385. We identified nine different haplogroups, most of which are frequent in Europe. Haplogroup J* is the second most frequent in the Azores (13.4%), but it is modestly represented in mainland Portugal (6.8%). The other non-European haplogroups, N3 and E3a, which are prevalent in Asia and sub-Saharan Africa, respectively, have been found in the Azores (0.6% and 1.2%, respectively) but not in mainland Portugal. Microsatellite data indicate that the mean gene diversity (D) value for all the loci analysed in our sample set is 0.590, while haplotype diversity is 0.9994. Taken together, our analysis suggests that the current paternal pool of the Azorean population is, to a great extent, of Portuguese descent with significant contributions from people with other genetic backgrounds.

Link

December 23, 2004

The real Santa Claus

Unlike the story about the alleged face of Jesus which used a random 1st century AD Jewish skull, a new forensic reconstruction of Santa Claus uses the actual relics of St. Nicholas to give an idea of what the original Santa Claus (who bears little resemblance to the Santa Claus of popular culture) looked like. It is unfortunate however that St. Nicholas is identified as "Turkish" in the article and other news stories. Tunderscores the difference between the traditional concept of nationality based on blood vs. the modern concept of nationality based on place of birth. Needless to say, "Turks" did not exist in 4th century AD Anatolia.

December 20, 2004

The Warriors of Paros

An excellent article about depictions of early Greek hoplites in vases from Paros (c. 730BC) and how they change our views about the development of Greek hoplite warfare.

December 15, 2004

The rape of Greek terminology

The use of newly-coined terms with Greek roots in many branches of science continues, for three main reasons: (i) the use of words of Greek origin continues the scientific tradition of the past (ii) composites are easily formed in the Greek language unlike many other languages of the word, (iii) the Greek language in its classical form is a timeless medium of communication, and thus avoids potential problems with the evolving semantics of words drawn from vocabularies of living languages.

A post at the Genealogy-DNA list is a great example of the dangers inherent in the demise of classical learning. In ages past, many scientists had a humanistic education or could refer to colleagues who did so, and this accounts for so many of the Greek terms used in modern discourse. Today, this is not the case, leading to many suggestions of words which amount to a rape of terminology.

Some examples from the above-linked post:

"anthrogenealogy" instead of "anthropogenealogy"
"genetealogy" for "genetic genealogy"
"begetealogy" allegedly a combination of "beget" and "genealogy" which fails both for being a composit of an English with a Greek word, and for not actually including the second part "genealogy" in the composite word, and for the awful hiatus "ea"
"parentealogy" allegedly a combination of "parent" and "genealogy"

Of course it is understandable that people want to invent new terms to express new ideas. But, one doesn't always need to form a new compound for every new word. If a venerable discipline like "Organic Chemistry" does not need an abbreviation, neither does "Genetic Genealogy".

Moreover, if someone is hell-bent on inventing new terms, they should at least consult an expert.

UPDATE:

Yet another "expert" suggests that "genealogy" itself ought to be changed to geneology because allegedly "genealogy" includes "alogy" which means "NOT logical". A knowledgeable reader corrects the continued abuse of the Greek language.

Greece Drops Bar to Turkey's Europe Bid, but Cyprus Picks It Up

Some excellent reporting from the New York Times which captures the reality of the situation almost completely:

Greece Drops Bar to Turkey's Europe Bid, but Cyprus Picks It Up

By SUSAN SACHS

Published: December 15, 2004

NICOSIA, Cyprus, Dec. 14 - It used to be that European politicians could count on Greece and Cyprus to stand in the way of Turkey's aspirations to join the European Union.

From the time Greece became a member in 1981, it raised the issue of Cyprus, divided into Greek and Turkish sides for more than 30 years, as an obstacle to Turkey's membership. The two countries have also quarreled over a constellation of tiny islands in the Aegean Sea, almost going to war over one deserted rock as recently as 1996.

But now, with much of Europe's populace up in arms over the possibility that Turkey may be invited to begin membership talks, Greece has abandoned its role as spoiler. In a sharp turn, it has become one of Turkey's biggest boosters in the negotiations preceding the European Union summit meeting that begins in Brussels on Thursday.

"I think many of our E.U. partners probably would have liked Greece to do their dirty work, the way it was 20 years ago," said Yannis G. Valinakis, the Greek deputy minister of foreign affairs. "Back then, they would hide behind Greece's back and say: 'Oh, those bloody Greeks. They're blocking us again.' "

As Greece has retreated from the fray, tiny Cyprus, with a population under 800,000, has stepped forward.

Leaders in France, Austria and Denmark, among others, have been trying to come up with a way to invite Turkey to start accession talks while signaling to their constituents, where misgivings about absorbing a Muslim country of 70 million people are rife, that the talks might never bear fruit. Cyprus may prove an ally in that effort.

After years spent in the political shadow of Greece, Cyprus became a member of the European Union in May. Now it has a veto, just like the other 24 members of the union.

Any decision on matters as serious as enlargement must be unanimous, and there is growing speculation, in Cyprus and in Brussels, that Cyprus's president, Tassos Papadopoulos, might use his veto to kill Turkey's hopes of starting accession talks if he does not get what he says Cyprus needs.

"Anyone who suggests that he won't use the veto ever, doesn't know him," said James Ker-Lindsay, a political analyst and director of a Cyprus research company called Civilitas. "He's not afraid to be a pariah."

President Papadopoulos originally laid out six conditions for his support for Turkey, including the withdrawal of Turkish troops from the divided island. Turkey, which sent its troops to Cyprus in 1974 after a coup there aimed at merging the island with Greece, has refused to discuss redeploying its troops except in the context of an overall settlement.

But recently the Cypriot leader's conditions have been distilled into a single demand: that membership talks not start until Turkey officially recognizes the Greek Cypriot government as the government of the entire island, as the European Union has done.

"I think our conditions in the whole setup are the most innocent conditions of those put on Turkey by the E.U.," said Kypros Chrysostomides, the Cypriot government spokesman.

Turkish officials have publicly refused the demand, and privately say they would have a hard time selling such a move to their public unless they first get a firm commitment to begin membership talks.

Yet they have become acutely aware that Cyprus can block a European Union consensus - precisely because, unlike other members, Cyprus has no bridges with Turkey that it fears might be burned.

Left-handers and homicide rate

This exciting new research discovered that the prevalence of left-handedness is correlated with the homicide rate in different human populations. The explanation proposed by the authors is that left-handers have an advantage during a fight, because they can surprise their opponents. This is supported by research in competitive sports where two individuals "fight" each other. However, in the past, fights were often to the death, and hence the advantage of left-handers would be selected, because they could fool their opponents more easily.

But, this ability to "fool" one's opponent is strongest when left-handedness is rare, i.e., when the right-hander doesn't expect it. As the frequency of left-handedness increases, the advantage of left-handers will gradually decrease. The equilibrium point will be different in different human societies depending on how "warlike" they are. In completely peaceful societies, no fights occur and hence left-handers have no advantage. In a very warlike society, left-handers get to kill their unfortunate right-handed opponents more frequently; but the frequency of left-handedness cannot increase unchecked, because its effectiveness diminishes as more and more people are using the "trick" of giving left-handed strikes.

The authors looked at eight traditional societies and discovered that left-handedness and the homicide rate, a measure of violence in a society are correlated. This gives strong support to this theory for the evolution of left-handedness.

Proceedings: Biological Sciences (FirstCite)

Handedness, homicide and negative frequency-dependent selection

Charlotte Faurie and Michel Raymond

Abstract:

Humans exhibit hand preference for most manual activities in which they are specialized. Right- and left-handers have coexisted at least since the Upper Palaeolithic, and left-handers are in the minority in all human populations. The persistence of the polymorphism of handedness is a puzzle because this trait is substantially heritable and several fitness costs are associated with left-handedness. Some countervailing benefit is required to maintain the polymorphism. Left-handers may have a frequency-dependent advantage in fights--the advantage being greater when their frequency is lower. Sports data from Western societies are consistent with this prediction. Here, we show that the frequency of left-handers is strongly and positively correlated with the rate of homicides across traditional societies. It ranges from 3% in the most pacifistic societies, to 27% in the most violent and warlike. This finding is consistent with a frequency-dependent selection mechanism maintaining left-handedness in these societies.

Link

December 12, 2004

Face Analyzer

Via NuSapiens a link to a Face Analyzer.

Some results [I cropped some of these images, so you might not get identical results when you try them]:

Pierce Brosnan = 46% Eastern European, 51% Anglo-Saxon, 3% Middle-Eastern
Antonio Banderas = 72% Southern European, 28% Anglo-Saxon
Vladimir Putin = 29% Eastern European, 71% Anglo-Saxon
Al Pacino = 13% Eastern European, 87% Anglo-Saxon
George W. Bush = 13% Eastern European, 52% Southern European, 35% Anglo-Saxon, Intelligence 5.9 (average)
John F. Kerry = 52% Eastern European, 48% Anglo-Saxon, Intelligence 5.9 (average)

Lots of precomputed celebrities

Conclusion: Needs work :)

Why were Minoan palaces abandoned in the Late Minoan period?

Journal of Archaeological Science (In Press)

Abandonment of Minoan palaces on Crete in relation to the earthquake induced changes in groundwater supply

Yuri Gorokhovich

Abstract

Mysterious abandonment of palaces on Crete during the Late Minoan period was always a challenging problem for archeologists and geologists. Various hypotheses explained this event by effects of tsunamis, earthquakes or climatic changes that were caused by the volcanic eruption of the Santorini volcano. While each of them or their possible combination contributed to the abandonment of palaces and following Late Minoan crisis, there is another possible cause that appeared as a result of studies within the last 20–30 years. This cause is depletion of groundwater supply caused by persistent earthquake activity that took place during the Bronze Age. This explanation is supported by field observations and numerous studies of similar phenomena in other locations.

Link

December 11, 2004

How Many Democrats per Republican at UC-Berkeley and Stanford?

How Many Democrats per Republican at UC-Berkeley and Stanford? Voter Registration Data Across 23 Academic Departments


Daniel B. Klein et al.

Abstract: Using the records of the seven San Francisco Bay Area counties that surround University of California, Berkeley and Stanford University, we conducted a systematic and thorough study of the party registration of the Berkeley and Stanford faculty in 23 academic departments. The departments span the social sciences, humanities, hard sciences, math, law, journalism, engineering, medicine, and the business school. Of the total of 1497 individual names on the cumulative list, we obtained readings on 1005, or 67 percent. The findings support the “one-party campus” conjecture. For UC-Berkeley, we found an overall Democrat:Republican ratio of 9.9:1. For Stanford, we found an overall D:R ratio of 7.6:1. Moreover, the breakdown by faculty rank shows that Republicans are an “endangered species” on the two campuses. This article contains a link to the complete data (with individual identities redacted).

Free Image Hosting at www.ImageShack.us

Free Image Hosting at www.ImageShack.us

Link