March 07, 2008

Genetic traces of east-to-west human expansion waves in Eurasia

American Journal of Physical Anthropology (early view)

Genetic traces of east-to-west human expansion waves in Eurasia

Raphaëlle Chaix et al.

In this study, we describe the landscape of human demographic expansions in Eurasia using a large continental Y chromosome and mitochondrial DNA dataset. Variation at these two uniparentally-inherited genetic systems retraces expansions that occurred in the past 60 ky, and shows a clear decrease of expansion ages from east to west Eurasia. To investigate the demographic events at the origin of this westward decrease of expansion ages, the estimated divergence ages between Eurasian populations are compared with the estimated expansion ages within each population. Both markers suggest that the demographic expansion diffused from east to west in Eurasia in a demic way, i.e., through migrations of individuals (and not just through diffusion of new technologies), highlighting the prominent role of eastern regions within Eurasia during Palaeolithic times.

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5 comments:

  1. I am surprised that this did not draw more interest. They are saying that people moved from China to Central Asia and then to the Middle East and Europe.

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  2. No, they aren't (or at least I highly doubt it). Have you read the paper?

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  3. Here is a passage from the discussion section of the paper.

    "If we extend these results to other parts of Eurasia, which always show proportions of LIC equal to 39% or less, our mtDNA results support a scenario in which
    the expansion diffused westward from the Far East (China and Mongolia) to Europe through recurrent gene flows and/or massive and sudden moves of people."

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  4. There is ample evidence (archaeological and genetic) of ancient expansions from Central Asia into Europe. There is none I'm aware for expansion from China (besides, some would claim, Y haplogroup N).

    Did the authors completely ignore phylogeny and focus purely on diversity? That's the impression I get from the abstract and supplementary material.

    I have no access to AJPA at the moment, but send me a copy of the pdf and I'll comment further.

    rhenotes@gmail.com

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  5. OK, thanks for sending the paper.

    I don't follow the authors' logic here:

    Indeed, our data point to Central Asia as having played
    first a role of receiver of genetic diversity coming from
    the Far East, and subsequently, a role of starting point
    of expansion waves toward western regions. Such scenario
    could explain the current distribution of mtDNA
    haplogroups in Eurasia, showing a clear distinction
    between eastern and western haplogroups and a mixture
    of these geographically-distinct haplogroups in Central
    Asia (Comas et al., 1998, 2004; Quintana-Murci et al.,
    2004; Derenko et al., 2007).


    No, the "clear distinction between eastern and western haplogroups" is strong evidence against the scenario propounded here. There is simply no way to interpret the mtDNA phylogeographic data as supporting an east-west demic diffusion starting in China.

    The basic idea behind the study (looking at "LIC") seems reasonable to me, at least on the surface. But I haven't reviewed in detail all the assumptions underlying it.

    The results on the Y chromosome are broadly in line with the phylogeographic evidence:

    Regarding Y chromosome data, the proportions of LIC
    observed between China and western Eurasia were high
    (76% and above) and such high percentages of LIC are
    compatible with the existence of independent expansion
    events in China on one hand and in western Eurasia on
    the other hand
    , although the percentage of LIC between
    China and Central Asia (76%) could also correspond to
    an extreme case of a diffusion of expansion through
    migrations with an old divergence age between the two
    regions (about 1,700 generations), a migration rate not
    higher than 0.0005 and a size before expansion N0 equal
    to at least 500.


    Exactly where they go wrong on the mtDNA side, I can't immediately say. The authors themselves mentions one possible confounding factor:

    However, given that
    the two genetic systems investigated here represent only
    two realizations of evolution and are both putative candidates
    for the action of natural selection
    (McElreavey
    et al., 2000; Mishmar et al., 2003; Bazin et al., 2006),
    sequence-based data from independent noncoding regions
    of the human genome would be useful to obtain a
    more robust view of Eurasian demographic history.


    Admixture may be the biggest issue, though the authors downplay the possibility:

    This approach has been criticized for being sensitive to a
    couple of phenomena: (i) the heterogeneity of mutation
    rates (Aris-Brosou and Excoffier, 1996) and (ii) past
    admixture events, which can both affect the shape of the
    mismatch distributions
    . However, there is no objective
    reason why these processes should affect the eastern
    and western populations differentially. Moreover, our
    simulation study comforts us in the validity of our
    approach, in particular since we took into account the
    heterogeneity of mutations rate in these simulations,
    this heterogeneity having little impact of the LIC proportions.
    Finally, the high proportion of observed unimodal
    mismatch distributions suggests that admixture events
    between genetically differentiated populations have been
    rare enough not to affect substantially the genetic landscape
    of Eurasian populations.


    In fact, both the Chinese and Central Asians are most likely products of "admixture events between genetically differentiated populations".

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